It seems that people are looking at the heat as one problem and even one source. In truth, it is several. An owner can experience any one...or all of them together.
Engine overheating, as seen on the gauge or by frequent fan operation, is a function and result of the cooling system. In reality the engine temperature is fairly constant, despite the gauge readings. Actual overheating will cause limp mode, but seldom happens if the fan is working and the coolant level is correct. Don't worry about how many bars are showing on the gauge unless it is not what you normally see, you have a limp mode, or your gauge is near the red.
Heat on the right foot comes from the radiator. In hot climates, the already hot air is heated as it cools the engine, and it becomes even hotter...sometimes blistering hot. The hot air stream exits on the right side and can be carried onto the rider's foot or leg. The ambient temperature, the model you ride, any mods affecting the air flow, whether the fan is running, the speed traveled, the direction of the wind, how you position your legs and feet, and whether or not you have highway pegs or footboards (that move your foot/leg closer to the heat source) all affect how much heat you will feel on the right side.
Heat on the left foot, other than with the 2008-2012 GS/RS, generally comes from the catalytic converter, which is mounted low on that side. The passenger may feel the worst of this. Other than at low speed operation, the CAT should not affect temperatures higher up, and certainly not farther forward. Heat on the left thigh of an RS/GS can be due to deteriorating Y-gaskets.
Heat around the seat and thighs is mostly a result of radiated engine and exhaust heat, which is trapped in the body and can't escape readily. The heat travels naturally upward, and will escape through any vent or opening it finds. What doesn't escape radiates heat to its surroundings...the body panels, gas tank, and seat. Each model shows differing heat characteristics in this area, partly due to differences in bodywork, venting, subpanels, insulation, and even way the rider is seated. Different windshields, windshield position, deflectors, and even carrying a passenger affect the air flow in this area and can change how much heat is felt. How the rider holds his/her legs and the rider's size and seating position also affect the amount felt.
A rider's apparel is a big factor in why some riders complain about the heat and some don't. Flip-flops are gonna fry your feet way more than boots. Mesh or insulated overpants will offer more protection than jeans...and especially more than shorts, etc. Tight clothing will pass more heat than looser apparel. It is hard to compare notes when we all wear different things to ride in. We all ride in different climates, too.
Hopefully this little synopsis will let those with problems concentrate on the area(s) most likely to be affecting them. A broad brush attack will just cost you money and waste your time. Look at where your problems are, look at what you wear, what you ride, and any mods you have made, and try to work out solutions for the things that are most likely to be affecingt you...cat converter shields if your left foot is hot, different apparel, insulation under the panels of an RS or ST, and so on. If you find a good solution, report it here, along with the specifics of where your problem was and what you ride. If you try something and it doesn't work, report that, too, so others don't have to reinvent the wheel. Too many folks talking about heat in general, and too few about specifics here to be of much use. Concentrate on each area separately and report the results in enough detail to decipher.
JMHO