If it's only a smallish pebble (damage site is less than 1/4 of the belts width) and it hasn't torn or frayed any, especially on the edges of the belt, then as far as the belt is concerned, you should be fairly safe to simply remove the pebble & ride on.
BUT, as you've already mentioned, a careful inspection of both front & rear pulleys is in order - the pebble may have damaged some of the teeth, either requiring remediation with a careful file, or if the damage is beyond that type of repair, replacement of the affected pulley... in which case you should probably replace the belt as well too! :lecturef_smilie:
Seriously, these belts are well able & up to to handling 'minor' damage from things like
small pebbles, and unless there's any fraying or tearing at &/or beyond the initial hole/damage site, the belt will likely show a 'self healing' effect on any small holes thru use & is likely to be perfectly serviceable for many more miles yet.

hyea:
But it's your ryde, and if you want to be sure to be sure! :thumbup: