Very common problem with the 998 V-Twin. Some get enough oil in the air box that it wets the air filter and drips out the weep hole in the corner. 'Normal' doesn't necessarily mean it's right or should be happening. What other vehicle have you owned where you find oil in the air box? If we were to be honest. We'd simply call it what it is. A design flaw.
You basically have 3 choices. 1- You can run with a low oil level and see if this helps. Usually, it does not because it's not the oil level in the reservoir causing the issue. The crankcase vent comes off the head, not the reservoir. If you do choose to run your oil level low, check often because the 998 uses oil. 2- You can run the oil level where it is supposed to be and live with oil in the air box (Choice #1 and #2 being very similar in results). Or 3- you can fix the problem and have the best of both worlds. A full oil reservoir and no oil in your air box.
The good news is, this issue is easily and cheaply remedied. There have been several approaches. One being a 'Catch Can'. However, a true catch can removes oil from the system (albeit, not that much) and requires maintenance. I recommend a crank case breather modification. It works just as well as a catch can, is less expensive and easier to install. And, it is virtually maintenance free. It also offers the advantage of returning perfectly good oil to the engine where it belongs instead of you draining it out from a catch-can. The necessary parts (Listed below) are readily available at any auto parts store, except for the open cell foam. Which I will provide you upon request.
All you need is one of these glass fuel filters...
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and 4 of these small hose clamps.
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You do not use the plastic nipples as they make the assembly too long. You do not use the fuel filter element so that gets removed. Instead, you will need a small chunk of open cell foam (which I will supply at no charge if you email me). You want the foam to fill the cavity but not be compressed (kind of defeats the 'Open Cell' component of the foam if you mash it into the filter housing).
Cut the vent hose so that the hex filter ends fit into the upper and lower hose, apply the clamps and you're done! I've had mine on for over 30,000 miles and have not had to do anything to it. It still works as well as the day I installed it.
The installed assembly ends up looking like this.
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